Alleles of HLA class II genes DQB1, DQA1, and DRB1 in the MHC region are major determinants of genetic predisposition to type 1 diabetes (T1D). Several alleles of each of these three loci are associated with susceptibility or protection from disease. In addition, relative risks for some DR-DQ genotypes are not simply the sum or product of the single haplotype relative risks. For example, the risk of the DRB1*03-DQB1*02/DRB1*0401-DQB1*0302 genotype is often found to be higher than for the individual DRB1*03-DQB1*02andDRB1*0401-DQB1*0302 homozygous genotypes. It has been hypothesized that this synergy or epistasis occurs through formation of highly susceptible trans-encoded HLA-DQ(alpha1, beta1) heterodimers. Here, we evaluated this hypothesis by estimating the disease associations of the range of DR-DQ genotypes and their inferred dimers in a large collection of nuclear families. We determined whether the risk of haplotypes in DRB1*0401-DQB1*0302-positive genotypes relative to the DRB1*03-DQB1*02-positive genotypes is different from that of DRB1*01-DQB1*0501, which we used as a baseline reference. Several haplotypes showed a different risk compared to DRB1*01-DQB1*0501, which correlated with their ability to form certain trans-encoded DQ dimers. This result provides new evidence for the potential importance of trans-encoded HLA DQ molecules in the determination of HLA-associated risk in T1D.

Genotype effects and epistasis in type 1 diabetes and HLA-DQ trans dimer associations with disease / Koeleman, Bpc; Lie, Ba; Undlien, De; Dudbridge, F; Thorsby, E; de Vries, Rrp; Cucca, Francesco; Roep, Bo; Giphart, Mj; Todd, Ja. - In: GENES AND IMMUNITY. - ISSN 1466-4879. - 5:5(2004), pp. 381-388. [10.1038/sj.gene.6364106]

Genotype effects and epistasis in type 1 diabetes and HLA-DQ trans dimer associations with disease

CUCCA, Francesco;
2004-01-01

Abstract

Alleles of HLA class II genes DQB1, DQA1, and DRB1 in the MHC region are major determinants of genetic predisposition to type 1 diabetes (T1D). Several alleles of each of these three loci are associated with susceptibility or protection from disease. In addition, relative risks for some DR-DQ genotypes are not simply the sum or product of the single haplotype relative risks. For example, the risk of the DRB1*03-DQB1*02/DRB1*0401-DQB1*0302 genotype is often found to be higher than for the individual DRB1*03-DQB1*02andDRB1*0401-DQB1*0302 homozygous genotypes. It has been hypothesized that this synergy or epistasis occurs through formation of highly susceptible trans-encoded HLA-DQ(alpha1, beta1) heterodimers. Here, we evaluated this hypothesis by estimating the disease associations of the range of DR-DQ genotypes and their inferred dimers in a large collection of nuclear families. We determined whether the risk of haplotypes in DRB1*0401-DQB1*0302-positive genotypes relative to the DRB1*03-DQB1*02-positive genotypes is different from that of DRB1*01-DQB1*0501, which we used as a baseline reference. Several haplotypes showed a different risk compared to DRB1*01-DQB1*0501, which correlated with their ability to form certain trans-encoded DQ dimers. This result provides new evidence for the potential importance of trans-encoded HLA DQ molecules in the determination of HLA-associated risk in T1D.
Genotype effects and epistasis in type 1 diabetes and HLA-DQ trans dimer associations with disease / Koeleman, Bpc; Lie, Ba; Undlien, De; Dudbridge, F; Thorsby, E; de Vries, Rrp; Cucca, Francesco; Roep, Bo; Giphart, Mj; Todd, Ja. - In: GENES AND IMMUNITY. - ISSN 1466-4879. - 5:5(2004), pp. 381-388. [10.1038/sj.gene.6364106]
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11388/60098
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